sickle

Running the application

Please do not run sickle on the login node. Jobs should be submitted to the compute nodes via batch.

Serial batch job submission

Make sure you have the modulefile loaded then create a batch submission script, for example:

#!/bin/bash --login
#$ -cwd             # Job will run from the current directory
module load apps/gcc/sickle/1.33 #we not recommend loading module files in job script
sickle arg1 arg2 > out.log

Submit the jobscript using:

qsub scriptname

where scriptname is the name of your jobscript.

Further info

• sickle website

Updates

None.