bcftools

Overview

BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF.

Versions 1.21 and 1.11 are installed on the CSF3

Restrictions on use

This software is open source and may be used by all CSF users.

Set up procedure

To access the software you must first load ONE of the modulefiles:

module load apps/gcc/bcftools/1.21     # compiled with GCC 14.2
module load apps/gcc/bcftools/1.11     # compiled with GCC 14.2

Further info

Updates

None.

Last modified on February 4, 2026 at 3:23 pm by Paraskevas Mitsides