tabix

Overview

Tabix is a generic indexer for TAB-delimited genome position files. Also provided is bgzip which is a block compression/decompression utility. Closely associated with SAMtools

Version 0.2.6 is installed on the CSF. It was compiled with gcc 4.7.0.

Version 1.3.1 is available through SAMtools

Restrictions on use

The software is open source. All CSF users may access it.

Set up procedure

To access the software you must first load the modulefile:

module load apps/gcc/tabix/0.2.6

Version 1.3.1 is available through SAMtools

Running the application

Please do not run tabix on the login node. Jobs should be submitted to the compute nodes via batch.

Serial batch job submission

Coming soon.

Parallel batch job submission

Coming soon.

Further info

• tabix manpage

Updates

None.