MACS2

Overview

Model-based Analysis of ChIP-Seq (MACS2)

Version 2.1.1.20160309 is installed on the CSF.

Restrictions on use

MACS2 is open source software and available to all users of the system. Please ensure you cite your usage in any results and publications.

Set up procedure

To access the software you must first load the modulefile:

apps/gcc/python-packages/anaconda-2.5.0/macs2/2.1.1.20160309

this will also automatically load the required version of python for you.

Running the application

Please do not run MACS2 on the login node. Jobs should be submitted to the compute nodes via batch.

Serial batch job submission

Awaiting suitable example.

Further info

• MACS website
• MACS2 github site
• MACS2 on pypi

Updates

None.