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Research Infrastructure > CSF2 (retired) > Software > Applications > SAMtools
- Applications
- Abaqus
- ACE
- ADF
- AMBER
- ANSWERS
- ASE
- AUGUSTUS
- Autodock4 and Vina
- BayesTraits
- Bart
- BCFtools
- bcl2fastq
- bedops
- bedtools
- BGEN
- bioawk
- Bioconductor (in R)
- BioPerl
- BitSeq
- BLAST
- BLAT
- Block Code for DMRG
- Bowtie
- Bowtie2
- BWA
- Canu
- CASTEP
- CASTEPconv
- CSD-System
- CFX
- Chainer
- CHARMM
- Chem Shell
- Code_Aster
- Code Saturne
- corHMM (R library)
- CP2K
- CCP4
- Crystal
- Cufflinks
- DFTB+
- DL_MESO
- DL_MONTE
- DL_POLY (classic)
- DL_POLY4 4.08
- DynamO
- Elk
- EMAN2
- EMIRGE
- Ensembl
- EVM
- Exciting
- Fast-LMM
- fasta_number
- fasta_splitter
- FastQC
- fastStructure
- FDS
- FEAT-WMT
- FE-SAFE
- ffmpeg
- FICO Xpress
- Fluent
- Freesurfer
- FSL
- GATK
- Gaussian
- Geneland (R library)
- GeneMark-ES
- Gephi
- Gerris2D / 3D
- Gold Suite
- GoodVibes
- GPAW
- gpyro
- Grace
- GROMACS
- Gubbins
- GULP
- HiCUP
- HOMER
- HTSeq
- IDBA and IDBA-UD
- IDL
- Illumina CASAVA-1.8 FASTQ Filter
- incompact3d
- Jupyter Notebook
- Keras
- LAMMPS
- LDSC
- LENS
- LS-DYNA
- Marge
- MACS
- MACS2
- Maestro
- Materials Studio
- Mathematica
- MATLAB
- MaxBin
- MDAnalysis
- MEGAHIT
- metaVelvet
- MGLTools
- MMTSB Toolset
- MOE
- MOLCAS and MOLCAS@UU
- MOLDEN
- MOPAC
- MosaicFinder
- MUMPS
- MrBayes
- Nanopolish
- NAMD
- Ngmlr
- NWChem
- Open Babel
- GNU Octave
- OpenEye
- OpenFOAM
- ORCA
- Ovito
- Packmol
- PANDAseq
- ParaView
- PBMPI
- PCAZip
- Phenix and Rosetta
- Picard (tools)
- Plumed
- POLYRATE
- Povray
- PowerFLOW
- Primer3
- Prodigal
- PyCoCo
- PyGMO
- PyMOL
- PyPcaZip
- PySnpTools
- PyStan
- Quantum ESPRESSO
- Quast and MetaQuast
- Questaal
- QIIME
- R
- RapMap
- RAxML
- Relion
- RepeatMasker
- RStudio
- Salmon
- SAMtools
- SCENIC (R library)
- Serpent
- Shellfish
- sickle
- SPAdes
- STACKS
- StarCCM+
- Star-CD
- Stata
- Structure
- sunlightHNC
- tabix
- Telemac
- Tensorflow
- Theano
- TopHat
- Towhee
- trimmomatic
- TURBOMOLE
- USEARCH
- VASP
- VCFtools
- Velvet
- Visual Colloids
- VOTCA
- VMD
- WRF and WPS
- WRF-Chem
- vsearch
- Xaim
- XCrySDen
- X! Tandem
- YADE
Last modified on August 1, 2016 at 2:14 pm by Site Admin
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