BCFtools

Overview

BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF.

Version 1.3.1 is installed on the CSF and it was compiled with GNU compilers 4.9.0.

Restrictions on use

This software is open source and may be used by all CSF users.

Set up procedure

To access the software you must first load the modulefile:

module load apps/gcc/bcftools/1.3.1

Running the application

Please do not run BCFtools on the login node. Jobs should be submitted to the compute nodes via batch.

Serial batch job submission

Coming soon…

Parallel batch job submission

Coming soon…

Further info

• BCFtools website

Updates

None.