MosaicFinder

Overview

MosaicFinder is a program for the identification of fused gene families in sequence similarity networks.

Version 2014-03-10 is installed on the CSF.

Restrictions on use

There are no access restrictions on using this software on the CSF.

Set up procedure

To access the software you must first load the modulefile:

module load apps/gcc/MosaicFinder/2014-03-10

Running the application

Please do not run MosaicFinder on the login node. Jobs should be submitted to the compute nodes via batch. You may run

sepmin -h

to see a list of flags the application accepts.

Serial batch job submission

Make sure you have the modulefile loaded then create a batch submission script, for example:

#!/bin/bash
#$ -S /bin/bash
#$ -cwd             # Job will run from the current directory
#$ -V               # Job will inherit current environment settings

sepmin -i inputfile -o outputfile -e evalue -p pident 

Submit the jobscript using:

qsub scriptname

where scriptname is the name of your jobscript.

Further info

• MosaicFinder website

Updates

None.