Research Infrastructure > CSF2 (retired) > Software > Applications > HiCUP

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The CSF2 has been replaced by the CSF3 - please use that system! This documentation may be out of date. Please read the CSF3 documentation instead.
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HiCUP

Overview

HiCUP is a tool for mapping and performing quality control on Hi-C data.

Version 0.5.8 and 0.4.2 are installed on the CSF.

Restrictions on use

HiCUP is open-source. All CSF users may access it.

Set up procedure

To access the software you must first load the modulefile:

module load apps/binapps/hicup/0.5.8

OR

module load apps/binapps/hicup/0.4.2

You may also require bowtie to be loaded when using this software.

Running the application

Please do not run HiCUP on the login node. Jobs should be submitted to the compute nodes via batch.

Serial batch job submission

Coming soon.

Parallel batch job submission

Coming soon.

Further info

Updates

None.

Last modified on February 23, 2016 at 11:50 am by Site Admin

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