fasta_splitter

Software not available to users. Details below will be completed once it is ready.

Overview

APP is a program to

Version N.M is installed on the CSF.

Restrictions on use

Details of the licence, restrictions, links to licence docs etc

Set up procedure

To access the software you must first load the modulefile:

module load apps/path/to/module/n.m

Running the application

Please do not run XXX on the login node. Jobs should be submitted to the compute nodes via batch.

Serial batch job submission

Make sure you have the modulefile loaded then create a batch submission script, for example:

#!/bin/bash
#$ -S /bin/bash
#$ -cwd             # Job will run from the current directory
#$ -V               # Job will inherit current environment settings

APP arg1 arg2 > out.log

Submit the jobscript using:

qsub scriptname

where scriptname is the name of your jobscript.

Parallel batch job submission

Given an example parallel jobscript, including suitable PE

Further info

• APP website

Updates

None.