Research Infrastructure > CSF2 (retired) > Software > Applications > bedtools

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The CSF2 has been replaced by the CSF3 - please use that system! This documentation may be out of date. Please read the CSF3 documentation instead.
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bedtools

Overview

bedtools is a fast, flexible toolset for genome arithmetic.

Versions 2.17.0 (compiled with GNU 4.7.0) and 2.21.0 (compiled with GNU 4.8.2) are installed on the CSF.

Restrictions on use

Bedtools is open source. All CSF users may access it.

Set up procedure

To access the software you must first load one of the following modulefile:

module load apps/gcc/bedtools/2.21.0
module load apps/gcc/bedtools/2.17.0

Running the application

Please do not run bedtools on the login node. Jobs should be submitted to the compute nodes via batch.

Serial batch job submission

Coming soon.

Parallel batch job submission

Coming soon.

Further info

Bedtools website

Updates

None.

Last modified on December 8, 2014 at 8:42 am by Site Admin

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