Research Infrastructure

Example usage from an X2GO Virtual Desktop

If you have not installed the X2GO client software on your laptop/desktop please use the setup guides in the menu on the left.

Please note: The examples below assume you have logged in to the Virtual Desktop Service – i.e, you are now sat at the MATE linux desktop which could be on nyx5/6/7 depending which desktop you have logged in to. If you cannot see the nyx5/6/7 linux desktop in your X2GO client, please follow the Logging in and out instructions.

From the linux virtual desktop we now do the following tasks…

Log in to the CSF (or iCSF, and other systems)

Note in the example below we log in to the CSF. But you can equally log in to other on-campus systems (such as the iCSF) from the virtual linux desktop. In the commands given below, simply replace the host name csf3.itservices.manchester.ac.uk with one from the following table:

System Hostname used for access
CSF csf3.itservices.manchester.ac.uk
iCSF incline256.itservices.manchester.ac.uk
incline.itservices.manchester.ac.uk
(see here for others)
condor submitter.itservices.manchester.ac.uk
Zrek zrek.itservices.manchester.ac.uk

We will log in to the CSF and open an application that displays a GUI (a simple editor named gedit in this example). A similar method would be used to run matlab or xstata on the iCSF for example. We also make our CSF home directory available to the virtual desktop to make transferring files between the two systems easier. You should see something like the following when you’ve been through the steps below (click on the image to enlarge it):
Logging in to the CSF from the X2GO desktop

Connecting to the CSF, or iCSF from nyx5/6/7

In this example we use the CSF, but it can be another system, such as the iCSF / incline or Zrek.

  • Select the Terminal icon in the top bar or from the Applications menu on your virtual desktop select System Tools → Terminal
  • Log into the remote system (CSF in this example) using your UoM IT password (same as used for email etc):
    ssh csf3
         #
         # You can use the full name csf3.itservices.manchester.ac.uk but
         # the shorter "csf3" name will also work from the nyx desktop.
    
    (enter IT password when asked)
    
  • Another example: Log into the remote system (iCSF in this example) using your UoM IT password (same as used for email etc):
    ssh incline256
                     #
                     # Note: You don't actually need to give the
                     # .itservices.manchester.ac.uk when on nyx5/6/7
    
    (enter IT password when asked)
    

You don’t need to give a username as the one on the virtual desktop is the same as on the CSF (or iCSF or zrek).

Running a GUI on the Remote System

Continuing with our example on the CSF, you now be logged in to the CSF login node. The command-prompt in your terminal window should indicate which system you are logged in to. For example:

[mabcxyz1@hlogin1 [csf3] ~]$
                    #
                    # Indicates the name of the remote system.
                    # Could also be incline, zrek

Any commands you type in this terminal window will be run on the CSF login node (in our example). Lightweight applications such as editors can be run there. For example run:

gedit csf-jobscript.sh

will open the linux text-editor, running on the CSF, but displaying on the nyx5/6/7 desktop.

Programs such as Abaqus, Fluent, Matlab, R etc must not be run on the CSF login node. Load and run these GUI application via qrsh as usual. Example use of Abaqus:

module load apps/binapps/abaqus/2019
qrsh -cwd -V -l short abq2019 cae -messa

Example use of VMD from the CSF login node:

module load apps/binapps/vmd/1.9.1
qrsh -cwd -V -l short vmd

For users of the iCSF, to run applications such as matlab or xstata, load the appropriate modulefile then start the application (no need for qrsh as on the CSF). For example:

# On the iCSF (incline)
module load apps/binapps/matlab/R2018a
matlab

The GUI will appear on your nyx5/6/7 desktop.

Access your CSF (or iCSF or Zrek) home directory on nyx5/6/7

Please see the instructions to mount your remote directory on nyx5,6,7.

Browse the Web on nyx5/6/7

Please start the Firefox web browser (it is available in the Applications menu on the nyx5/6/7 desktop).

Last modified on April 10, 2021 at 3:13 pm by George Leaver