HiCUP

Overview

HiCUP is a tool for mapping and performing quality control on Hi-C data.

Version 0.4.2 is installed on the iCSF.

Restrictions on use

HiCUP is open-source. All iCSF users may access it.

Set up procedure

To access the software you must first load the modulefile:

module load apps/binapps/hicup/0.4.2

You may also require bowtie to be loaded when using this software.

Running the application

Coming soon.

Further info

Updates

None.

Last modified on January 20, 2014 at 2:06 pm by Site Admin