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Tools
List of tools for common tasks such as editing files, software development and configuration, simple post-processing. Please not that while these tools are often run on the login node, if you are processing large files or running jobs that take more than a few minutes to run, please run these tools via the batch queue. This can easily be done with a simple jobscript. Long running post-processing jobs may be killed if they are affecting the performance of the login node.
PACKAGE | NOTES |
---|---|
Anaconda Python | A scientific python distribution |
ARWpost | WRF data post processing |
autoconf | A tool for producing configure scripts |
automake | A tool for producing portable makefiles |
cmake | Cross-platform, open-source build system |
Editors | Text file editors – gedit, nano, vi, emacs and advice for windows users |
evince | A document viewer, particularly useful for accessing PDF documentation |
git | Version Control |
gnuplot | Command line driven plotting tool |
grace/xmgrace | 2D plotting tool |
java | Java application launcher |
Jupyter Notebook | Jupyter Notebook interactive web-base python server |
LFTP | Command-line File Transfer Program (FTP) |
ncl | NCAR Command Language for post-processing and visualization |
NEdit | Text file editor with source code highlighting |
Perl | Perl and Bioperl |
Pigz | Parallel gzip file compression/decompression |
Python | An interpreted, general-purpose high-level programming language |
Subversion/svn | Version Control |
UKBioBank Env Vars | Environment variables to help access UK BioBank full-release datasets. |
unrar | RAR archive decompressor |
wget | Downloader tool |
Xmgr | 2D interactive plotting tool |
xmlstarlet | Command line XML toolkit |