Qrsh example: genbox

Without an xterm

  login> module load apps/intel-11.1/gromacs/4.5.4/single

  login> qrsh -V -l short genbox -ci conf.gro -nmol 3000 \
             -box 20.0 20.0 20.0  -o out.gro
      # ...N.B. the "-V"...

With an xterm

  login> qrsh -l short xterm

  cnode> module load apps/intel-11.1/gromacs/4.5.4/single

  cnode> genbox -ci conf.gro -nmol 3000 -box 20.0 20.0 20.0 \
              -o out.gro