{"id":896,"date":"2019-01-18T11:28:03","date_gmt":"2019-01-18T11:28:03","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/icsf\/?page_id=896"},"modified":"2019-01-18T11:28:03","modified_gmt":"2019-01-18T11:28:03","slug":"tadtool","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/software\/applications\/tadtool\/","title":{"rendered":"TADtool"},"content":{"rendered":"<h2>Overview<\/h2>\n<p><a href=\"https:\/\/github.com\/vaquerizaslab\/tadtool\">TADtool<\/a> is an interactive tool for the identification of meaningful parameters in topologically-associating domains (TADs) algorithms for Hi-C data.<\/p>\n<p>Version 0.77 is installed on the CSF. This can use Anaconda Python v5.0.1 (python 3.6.3).<\/p>\n<h2>Restrictions on use<\/h2>\n<p>There are no restrictions on accessing TADtool on the CSF. The source is released under the <a href=\"https:\/\/github.com\/vaquerizaslab\/tadtool\/blob\/master\/LICENSE\">MIT License<\/a> and all usage must adhere to that license.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software you must first load <em>one<\/em> of the following modulefile:<\/p>\n<pre>\r\nmodule load apps\/gcc\/python-packages\/anaconda3-5.0.1\/tadtool\/0.77\r\n<\/pre>\n<p>The modulefile will automatically load the required version of Anaconda modulefile for you.<\/p>\n<h2>Running the application<\/h2>\n<p>The <code>tadtool<\/code> command will be available to you:<\/p>\n<pre>\r\ntadtool\r\n\r\nusage: tadtool <command> [options]\r\n\r\nCommands:\r\n    plot                Main interactive TADtool plotting window\r\n    tads                Call TADs with pre-defined parameters\r\n    subset              Reduce a matrix to a smaller region.\r\n\r\nRun tadtool <command> -h for help on a specific command.\r\n<\/pre>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"https:\/\/github.com\/vaquerizaslab\/tadtool\">TADtool github website<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview TADtool is an interactive tool for the identification of meaningful parameters in topologically-associating domains (TADs) algorithms for Hi-C data. Version 0.77 is installed on the CSF. This can use Anaconda Python v5.0.1 (python 3.6.3). Restrictions on use There are no restrictions on accessing TADtool on the CSF. The source is released under the MIT License and all usage must adhere to that license. Set up procedure To access the software you must first load.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/software\/applications\/tadtool\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":43,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-896","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/896","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/comments?post=896"}],"version-history":[{"count":1,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/896\/revisions"}],"predecessor-version":[{"id":897,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/896\/revisions\/897"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/43"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/media?parent=896"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}