{"id":133,"date":"2014-01-20T13:33:33","date_gmt":"2014-01-20T13:33:33","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/icsf\/?page_id=133"},"modified":"2014-01-20T14:06:38","modified_gmt":"2014-01-20T14:06:38","slug":"hicup","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/software\/applications\/hicup\/","title":{"rendered":"HiCUP"},"content":{"rendered":"<h2>Overview<\/h2>\n<p>HiCUP is a tool for mapping and performing quality control on Hi-C data.<\/p>\n<p>Version 0.4.2 is installed on the iCSF.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>HiCUP is open-source. All iCSF users may access it.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software you must first load the modulefile:<\/p>\n<pre>\r\nmodule load apps\/binapps\/hicup\/0.4.2\r\n<\/pre>\n<p>You may also require <a href=\"\/icsf\/software\/applications\/bowtie\">bowtie<\/a> to be loaded when using this software.<\/p>\n<h2>Running the application<\/h2>\n<p>Coming soon.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"http:\/\/www.bioinformatics.babraham.ac.uk\/projects\/hicup\/\">HiCUP website<\/a>.<\/li>\n<li><a href=\"http:\/\/www.bioinformatics.babraham.ac.uk\/projects\/hicup\/README.txt\">HiCUP README<\/a>.<\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview HiCUP is a tool for mapping and performing quality control on Hi-C data. Version 0.4.2 is installed on the iCSF. Restrictions on use HiCUP is open-source. All iCSF users may access it. Set up procedure To access the software you must first load the modulefile: module load apps\/binapps\/hicup\/0.4.2 You may also require bowtie to be loaded when using this software. Running the application Coming soon. Further info HiCUP website. HiCUP README. Updates None.<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":43,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-133","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/133","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/comments?post=133"}],"version-history":[{"count":9,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/133\/revisions"}],"predecessor-version":[{"id":173,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/133\/revisions\/173"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/43"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/media?parent=133"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}