{"id":128,"date":"2014-01-20T13:30:02","date_gmt":"2014-01-20T13:30:02","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/icsf\/?page_id=128"},"modified":"2023-11-10T16:38:52","modified_gmt":"2023-11-10T16:38:52","slug":"bedtools","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/software\/applications\/bedtools\/","title":{"rendered":"bedtools"},"content":{"rendered":"<h2>Overview<\/h2>\n<p>bedtools is a fast, flexible toolset for genome arithmetic.<\/p>\n<p>Versions 2.17.0 (compiled with gcc 4.7.0) and 2.21.0 (compiled with gcc 4.8.2) are installed on the iCSF.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>Bedtools is open source. All iCSF users may access it.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software you must first load the modulefile:<\/p>\n<pre>\r\nmodule load apps\/gcc\/bedtools\/2.21.0\r\nmodule load apps\/gcc\/bedtools\/2.17.0\r\n<\/pre>\n<h2>Running the application<\/h2>\n<p>Coming soon.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"http:\/\/bedtools.readthedocs.org\/en\/latest\/\">Bedtools website<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview bedtools is a fast, flexible toolset for genome arithmetic. Versions 2.17.0 (compiled with gcc 4.7.0) and 2.21.0 (compiled with gcc 4.8.2) are installed on the iCSF. Restrictions on use Bedtools is open source. All iCSF users may access it. Set up procedure To access the software you must first load the modulefile: module load apps\/gcc\/bedtools\/2.21.0 module load apps\/gcc\/bedtools\/2.17.0 Running the application Coming soon. Further info Bedtools website Updates None.<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":43,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-128","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/128","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/comments?post=128"}],"version-history":[{"count":10,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/128\/revisions"}],"predecessor-version":[{"id":1258,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/128\/revisions\/1258"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/pages\/43"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/icsf\/wp-json\/wp\/v2\/media?parent=128"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}