{"id":404,"date":"2018-02-02T13:03:02","date_gmt":"2018-02-02T13:03:02","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/htccondor\/?page_id=404"},"modified":"2025-03-05T09:54:21","modified_gmt":"2025-03-05T09:54:21","slug":"r","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/software\/r\/","title":{"rendered":"R"},"content":{"rendered":"
\n

Overview<\/span><\/h2>\n

R is a language and environment for statistical computing and graphics developed by the R community<\/a>. R provides a wide variety of statistical (linear and nonlinear modeling, classical statistical tests, time-series analysis, classification, clustering, \u2026) and graphical techniques, and is highly extensible.<\/p>\n

Restrictions on use\/License information<\/h2>\n

R is released under the GNU GPL v2<\/a>.<\/p>\n

There is no restriction on the number of simultaneously running programs on HTCondor.<\/p>\n

Versions installed<\/span><\/h2>\n\n\n\n\n\n\n
R version<\/th>\nHTCondor ClassAd<\/th>\n<\/tr>\n
3.6.0<\/td>\nHAS_R_3_6_0<\/td>\n<\/tr>\n
4.1.2<\/td>\nHAS_R_4_1_2<\/td>\n<\/tr>\n
4.3.3<\/td>\nHAS_R_4_3_3<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Set up procedure on submit node<\/span><\/h2>\n

R can be enabled using the command:<\/p>\n

\r\nmodule load R\/<R version>\r\n<\/pre>\n
and then run using the command R<\/tt>.<\/p>\n
Running the application<\/span><\/h2>\n
The following lines are the contents of a simple generic HTCondor submit text file for submitting an R job that does not require the installation of any additional R packages<\/strong> to HTCondor:<\/p>\n
\r\nUniverse = vanilla\r\n\r\nRequirements = (Target.Opsys == \"LINUX\" && Target.Arch == \"X86_64\" && <HTCondor ClassAd>=?=True)\r\nRequest_Memory = 1000\r\n\r\nLog = R.log\r\nOutput = R.out\r\nError = R.error\r\nNotification = Error\r\n\r\nShould_Transfer_Files = Yes\r\nWhen_To_Transfer_Output = On_Exit\r\n\r\nExecutable = \/opt\/R-<R version>\/bin\/Rscript\r\nTransfer_Executable = False\r\nArguments = --no-save <script>.R <input arguments>\r\nTransfer_Input_Files = <script>.R\r\n\r\nQueue\r\n<\/pre>\n
If your submit file is called submit.txt<\/tt> then your job can be submitted to HTCondor using the command condor_submit submit.txt<\/tt>.<\/p>\n
Sample R HTCondor jobs<\/h2>\n
    \n
  1. R code for calculating Pi using n<\/em> terms of the Gregory series<\/a>.<\/li>\n
  2. R code for listing available R packages<\/a>.<\/li>\n
  3. Sample code that demonstrates how to use additional R packages<\/a>.<\/li>\n<\/ol>\n
    <\/body><\/html><\/p>\n","protected":false},"excerpt":{"rendered":"
    Overview R is a language and environment for statistical computing and graphics developed by the R community. R provides a wide variety of statistical (linear and nonlinear modeling, classical statistical tests, time-series analysis, classification, clustering, \u2026) and graphical techniques, and is highly extensible. Restrictions on use\/License information R is released under the GNU GPL v2. There is no restriction on the number of simultaneously running programs on HTCondor. Versions installed R version HTCondor ClassAd 3.6.0.. Read more »<\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":17,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-404","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/pages\/404","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/comments?post=404"}],"version-history":[{"count":20,"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/pages\/404\/revisions"}],"predecessor-version":[{"id":1251,"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/pages\/404\/revisions\/1251"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/pages\/17"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/htccondor\/wp-json\/wp\/v2\/media?parent=404"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}