{"id":8599,"date":"2025-01-27T12:12:05","date_gmt":"2025-01-27T12:12:05","guid":{"rendered":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/?page_id=8599"},"modified":"2025-01-27T12:15:52","modified_gmt":"2025-01-27T12:15:52","slug":"sratools","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/software\/sratools\/","title":{"rendered":"sratools"},"content":{"rendered":"<h2>Overview<\/h2>\n<p><a href=\"https:\/\/github.com\/ncbi\/sra-tools\/wiki\">sratools<\/a> &#8211;  is a bioinformatics suite of tools.<\/p>\n<p>A numebr of versions are installed, see below.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>There are no restrictions on accessing the software on the CSF.<\/p>\n<h2>Set up procedure<\/h2>\n<p>We now recommend loading modulefiles within your jobscript so that you have a full record of how the job was run. <\/p>\n<p>Load one of the following modulefile:<\/p>\n<pre>\r\nmodule load apps\/binapps\/sra\/2.10.7\r\nmodule load  apps\/binapps\/sra\/2.11.3\r\nmodule load  apps\/binapps\/sra\/3.0.0\r\nmodule load  apps\/binapps\/sra\/3.2.0\r\n<\/pre>\n<h2>Running the application<\/h2>\n<p>You MUST NOT run this software on the login node. Please create a <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/batch\/\">batch job<\/a> or use <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/batch\/qrsh\/\">qrsh<\/a> for interactive work.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"https:\/\/github.com\/ncbi\/sra-tools\/wiki\">sratools website<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview sratools &#8211; is a bioinformatics suite of tools. A numebr of versions are installed, see below. Restrictions on use There are no restrictions on accessing the software on the CSF. Set up procedure We now recommend loading modulefiles within your jobscript so that you have a full record of how the job was run. Load one of the following modulefile: module load apps\/binapps\/sra\/2.10.7 module load apps\/binapps\/sra\/2.11.3 module load apps\/binapps\/sra\/3.0.0 module load apps\/binapps\/sra\/3.2.0 Running the.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/software\/sratools\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":33,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-8599","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/8599","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/comments?post=8599"}],"version-history":[{"count":4,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/8599\/revisions"}],"predecessor-version":[{"id":8604,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/8599\/revisions\/8604"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/33"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/media?parent=8599"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}