{"id":8592,"date":"2025-01-27T11:14:36","date_gmt":"2025-01-27T11:14:36","guid":{"rendered":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/?page_id=8592"},"modified":"2025-01-27T12:16:23","modified_gmt":"2025-01-27T12:16:23","slug":"gotcloud","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/software\/gotcloud\/","title":{"rendered":"GotCloud"},"content":{"rendered":"<h2>Overview<\/h2>\n<p><a href=\"https:\/\/genome.sph.umich.edu\/wiki\/GotCloud\">GotCloud<\/a> &#8211; Genomes on the Cloud &#8211; is a tool used in next generation sequencing and genotyping data.<\/p>\n<p>Version 1.17.5 is installed on the CSF. It includes vcfCooker.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>There are no restrictions on accessing the software on the CSF.<\/p>\n<h2>Set up procedure<\/h2>\n<p>We now recommend loading modulefiles within your jobscript so that you have a full record of how the job was run. <\/p>\n<p>Load the following modulefile:<\/p>\n<pre>module load apps\/gcc\/gotcloud\/1.17.5\r\n<\/pre>\n<h2>Running the application<\/h2>\n<p>You MUST NOT run this software on the login node. Please create a <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/batch\/\">batch job<\/a> or use <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/batch\/qrsh\/\">qrsh<\/a> for interactive work.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"https:\/\/genome.sph.umich.edu\/wiki\/GotCloud\">GotCloud website<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview GotCloud &#8211; Genomes on the Cloud &#8211; is a tool used in next generation sequencing and genotyping data. Version 1.17.5 is installed on the CSF. It includes vcfCooker. Restrictions on use There are no restrictions on accessing the software on the CSF. Set up procedure We now recommend loading modulefiles within your jobscript so that you have a full record of how the job was run. Load the following modulefile: module load apps\/gcc\/gotcloud\/1.17.5 Running.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/software\/gotcloud\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":33,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-8592","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/8592","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/comments?post=8592"}],"version-history":[{"count":6,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/8592\/revisions"}],"predecessor-version":[{"id":8605,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/8592\/revisions\/8605"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/33"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/media?parent=8592"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}