{"id":2907,"date":"2019-03-29T14:51:11","date_gmt":"2019-03-29T14:51:11","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf3\/?page_id=2907"},"modified":"2019-03-29T15:59:29","modified_gmt":"2019-03-29T15:59:29","slug":"sickle","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/software\/applications\/sickle\/","title":{"rendered":"sickle"},"content":{"rendered":"<h2>Running the application<\/h2>\n<p>Please do not run sickle on the login node. Jobs should be submitted to the compute nodes via batch.<\/p>\n<h3>Serial batch job submission<\/h3>\n<p>Make sure you have the modulefile loaded then create a batch submission script, for example:<\/p>\n<pre>#!\/bin\/bash --login\r\n#$ -cwd             # Job will run from the current directory\r\nmodule load apps\/gcc\/sickle\/1.33 #we not recommend loading module files in job script\r\nsickle arg1 arg2 &gt; out.log\r\n<\/pre>\n<p>Submit the jobscript using:<\/p>\n<pre>qsub <em>scriptname<\/em><\/pre>\n<p>where <em>scriptname<\/em> is the name of your jobscript.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"https:\/\/github.com\/najoshi\/sickle\">sickle website<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Running the application Please do not run sickle on the login node. Jobs should be submitted to the compute nodes via batch. Serial batch job submission Make sure you have the modulefile loaded then create a batch submission script, for example: #!\/bin\/bash &#8211;login #$ -cwd # Job will run from the current directory module load apps\/gcc\/sickle\/1.33 #we not recommend loading module files in job script sickle arg1 arg2 &gt; out.log Submit the jobscript using: qsub.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/software\/applications\/sickle\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":6,"featured_media":0,"parent":86,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2907","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/2907","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/comments?post=2907"}],"version-history":[{"count":4,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/2907\/revisions"}],"predecessor-version":[{"id":2924,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/2907\/revisions\/2924"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/86"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/media?parent=2907"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}