{"id":144,"date":"2018-09-04T11:21:24","date_gmt":"2018-09-04T10:21:24","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf3\/?page_id=144"},"modified":"2018-09-04T11:21:51","modified_gmt":"2018-09-04T10:21:51","slug":"tools","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/software\/tools\/","title":{"rendered":"Tools"},"content":{"rendered":"<p>List of tools for common tasks such as editing files, software development and configuration, simple post-processing. Please not that while these tools are often run on the login node, if you are processing large files or running jobs that take more than a few minutes to run, please run these tools via the batch queue. This can easily be done with a simple jobscript. Long running post-processing jobs may be killed if they are affecting the performance of the login node.<\/p>\n<div class=\"hidden\">\n<h3>Instructions only shown to logged-in users<\/h3>\n<p>The tables shown here are auto-populated. When editing a Tools page, ensure the page&#8217;s custom field values <code>RI_Summary<\/code> is set to a short description and <code>RI_Cat<\/code> is set to <code>tool<\/code>.\n<\/div>\n<h2>Tools and Utilities<\/h2><a name=\"tool\"><\/a><table class=\"striped\"><thead><tr><th width=\"30%\">PACKAGE<\/th><th>NOTES<\/th><\/tr><\/thead><tbody><tr><td><a href=\"\/csf3\/software\/tools\/dotnet\/\">.NET<\/a><\/td><td>.NET is the C# runtime <\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/awscli\/\">AWS CLI<\/a><\/td><td>AWS command line interface<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/cmake\/\">cmake<\/a><\/td><td>Cross-platform, open-source build system<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/curl\/\">Curl and libcurl<\/a><\/td><td>Downloader and development library<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/dcm2niix\/\">dcm2niix<\/a><\/td><td>DICOM to the NIfTI file converter<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/gedit\/\">gedit - a simple text editor<\/a><\/td><td>A simple text editor, similar to notepad<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/git\/\">git &amp; git-lfs<\/a><\/td><td>Version Control<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/gnuplot\/\">Gnuplot<\/a><\/td><td>A command-line driven graphing utility.<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/grace\/\">Grace \/ xmgrace<\/a><\/td><td>2D interactive plotting tool<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/ninja\/\">ninja<\/a><\/td><td>Software build system<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/p7zip\/\">p7zip<\/a><\/td><td>7z archive compression and decompression<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/pigz\/\">pigz and unpigz<\/a><\/td><td>Parallel gzip file compression\/decompression<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/proxy\/\">Proxy (for web downloads)<\/a><\/td><td>Envronment setup to give name of proxy server<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/pycharm\/\">PyCharm<\/a><\/td><td>Python IDE<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/scons\/\">SCons<\/a><\/td><td>Software configuration tool<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/sqlitebrowser\/\">SQLite browser (DB4S)<\/a><\/td><td>Graphical browser for sqlite files<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/svn\/\">Subversion (svn)<\/a><\/td><td>Version Control<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/ukbiobank\/\">UKBioBank Helper Modulefile<\/a><\/td><td>Environment variables to help access UK BioBank full-release datasets.<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/unzip\/\">unzip<\/a><\/td><td>Extract files from zip archives<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/vscode\/\">VSCode<\/a><\/td><td>A popular source-code editor by Microsoft.<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/xnedit\/\">xnedit - a simple text editor<\/a><\/td><td>A simple text editor, similar to Notepad<\/td><\/tr><tr><td><a href=\"\/csf3\/software\/tools\/zstd\/\">zstd<\/a><\/td><td>fast lossless compression algorithm, targeting real-time compression scenarios at zlib-level and better compression ratios<\/td><\/tr><\/tbody><\/table>\n","protected":false},"excerpt":{"rendered":"<p>List of tools for common tasks such as editing files, software development and configuration, simple post-processing. Please not that while these tools are often run on the login node, if you are processing large files or running jobs that take more than a few minutes to run, please run these tools via the batch queue. This can easily be done with a simple jobscript. Long running post-processing jobs may be killed if they are affecting.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/software\/tools\/zstd\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":33,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-144","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/144","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/comments?post=144"}],"version-history":[{"count":2,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/144\/revisions"}],"predecessor-version":[{"id":147,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/144\/revisions\/147"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/pages\/33"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf3\/wp-json\/wp\/v2\/media?parent=144"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}