{"id":4780,"date":"2018-07-03T09:47:02","date_gmt":"2018-07-03T09:47:02","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/?page_id=4780"},"modified":"2018-07-03T09:50:52","modified_gmt":"2018-07-03T09:50:52","slug":"illumina-casava-1-8-fastq-filter","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/illumina-casava-1-8-fastq-filter\/","title":{"rendered":"Illumina CASAVA-1.8 FASTQ Filter"},"content":{"rendered":"<h2>Overview<\/h2>\n<p>produces FASTQ files with both reads that pass filtering and reads that don&#8217;t.<\/p>\n<p>Version 0.1 is installed on the CSF.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>AGPLv3. Open source. All CSF users may access it.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software you must first load the following modulefile:<\/p>\n<pre>\r\nmodule load apps\/gcc\/casava\/0.1\r\n<\/pre>\n<h2>Running the application<\/h2>\n<p>Please do not run on the login node. Jobs should be submitted to the compute nodes via batch.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"http:\/\/cancan.cshl.edu\/labmembers\/gordon\/fastq_illumina_filter\/\">Illumina CASAVA-1.8 FASTQ Filter website<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview produces FASTQ files with both reads that pass filtering and reads that don&#8217;t. Version 0.1 is installed on the CSF. Restrictions on use AGPLv3. Open source. All CSF users may access it. Set up procedure To access the software you must first load the following modulefile: module load apps\/gcc\/casava\/0.1 Running the application Please do not run on the login node. Jobs should be submitted to the compute nodes via batch. Further info Illumina CASAVA-1.8.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/illumina-casava-1-8-fastq-filter\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":24,"featured_media":0,"parent":31,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-4780","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/4780","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/users\/24"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/comments?post=4780"}],"version-history":[{"count":2,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/4780\/revisions"}],"predecessor-version":[{"id":4784,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/4780\/revisions\/4784"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/31"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/media?parent=4780"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}