{"id":416,"date":"2013-04-26T14:03:51","date_gmt":"2013-04-26T14:03:51","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/?page_id=416"},"modified":"2013-05-02T10:04:16","modified_gmt":"2013-05-02T10:04:16","slug":"blat","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/blat\/","title":{"rendered":"BLAT"},"content":{"rendered":"<h2>Overview<\/h2>\n<p>BLAT (Blast Like Alignment Tool) is a bioinformatics software a tool which performs rapid mRNA\/DNA and cross-species protein alignments. BLAT is more accurate and 500 times faster than popular existing tools for mRNA\/DNA alignments and 50 times faster for protein alignments at sensitivity settings typically used when comparing vertebrate sequences. (Source: Kent, W.J. 2002. BLAT &#8212; The BLAST-Like Alignment Tool. Genome Research 4: 656-664.)<\/p>\n<p>Version 35 is available on the CSF. It was compiled with gcc 4.4.6 .<\/p>\n<h2>Restrictions on use<\/h2>\n<p>All users may access the software. All files are copyrighted, but the license allows personal, academic, and non-profit use. Commercial use is not permitted.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software please load the modulefile:<\/p>\n<pre class=\"in1\">module load apps\/gcc\/blat\/35<\/pre>\n<h2>Running the application<\/h2>\n<h3>Serial batch job submission<\/h3>\n<p>To follow&#8230;<\/p>\n<h3>Parallel batch job submission<\/h3>\n<p>To follow&#8230;<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/goldenPath\/help\/blatSpec.html\">BLAT Suite Program Specifications and User Guide<\/a><\/li>\n<li><a href=\"http:\/\/genome.ucsc.edu\/FAQ\/FAQblat.html\">Blat FAQ at UCSC<\/a><\/li>\n<li><a href=\"http:\/\/users.soe.ucsc.edu\/~kent\/\">Authors website<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Overview BLAT (Blast Like Alignment Tool) is a bioinformatics software a tool which performs rapid mRNA\/DNA and cross-species protein alignments. BLAT is more accurate and 500 times faster than popular existing tools for mRNA\/DNA alignments and 50 times faster for protein alignments at sensitivity settings typically used when comparing vertebrate sequences. (Source: Kent, W.J. 2002. BLAT &#8212; The BLAST-Like Alignment Tool. Genome Research 4: 656-664.) Version 35 is available on the CSF. It was compiled.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/blat\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":31,"menu_order":0,"comment_status":"open","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-416","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/416","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/comments?post=416"}],"version-history":[{"count":2,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/416\/revisions"}],"predecessor-version":[{"id":602,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/416\/revisions\/602"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/31"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/media?parent=416"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}