{"id":3706,"date":"2017-03-15T14:14:26","date_gmt":"2017-03-15T14:14:26","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/?page_id=3706"},"modified":"2017-03-15T14:20:28","modified_gmt":"2017-03-15T14:20:28","slug":"bcftools","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/bcftools\/","title":{"rendered":"BCFtools"},"content":{"rendered":"<h2>Overview<\/h2>\n<p><a href=\"https:\/\/samtools.github.io\/bcftools\/howtos\/index.html\">BCFtools<\/a>  is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF.<\/p>\n<p>Version 1.3.1 is installed on the CSF and it was compiled with GNU compilers 4.9.0.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>This software is open source and may be used by all CSF users.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software you must first load the modulefile:<\/p>\n<pre>\r\nmodule load apps\/gcc\/bcftools\/1.3.1\r\n<\/pre>\n<h2>Running the application<\/h2>\n<p>Please do not run BCFtools on the login node. Jobs should be submitted to the compute nodes via batch.<\/p>\n<h3>Serial batch job submission<\/h3>\n<p>Coming soon&#8230;<\/p>\n<h3>Parallel batch job submission<\/h3>\n<p>Coming soon&#8230;<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"https:\/\/samtools.github.io\/bcftools\/howtos\/index.html\">BCFtools website<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. Version 1.3.1 is installed on the CSF and it was compiled with GNU compilers 4.9.0. Restrictions on use This software is open source and may be used by all CSF users. Set up procedure To access the software you must first load the modulefile: module load apps\/gcc\/bcftools\/1.3.1 Running the application Please do not.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/bcftools\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":16,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-3706","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3706","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/users\/16"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/comments?post=3706"}],"version-history":[{"count":4,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3706\/revisions"}],"predecessor-version":[{"id":3711,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3706\/revisions\/3711"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/media?parent=3706"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}