{"id":3697,"date":"2017-03-14T11:48:01","date_gmt":"2017-03-14T11:48:01","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/?page_id=3697"},"modified":"2017-03-14T12:04:48","modified_gmt":"2017-03-14T12:04:48","slug":"pystan","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/pystan\/","title":{"rendered":"PyStan"},"content":{"rendered":"<h2>Overview<\/h2>\n<p>PyStan provides an interface to Stan, a package for Bayesian inference using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo.<\/p>\n<p>Version 2.14.0.0 is installed on the CSF.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>This software is open source so all CSF users may access it.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software you must first load the modulefile:<\/p>\n<pre>\r\nmodule load apps\/gcc\/python-packages\/anaconda-2.5.0\/stan\/2.14.0.0\r\n<\/pre>\n<p>Note: this will automatically load anaconda python 2.5.0 for you (and the appropriate gcc compiler).<\/p>\n<h2>Running the application<\/h2>\n<p>Please do not run PyStan on the login node. Jobs should be submitted to the compute nodes via batch.<\/p>\n<h3>Batch job submission<\/h3>\n<p>Please write a job submission script and use <code>qsub<\/code> to submit it to the system.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"https:\/\/pystan.readthedocs.io\/en\/latest\/index.html\">PyStan website<\/a><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Overview PyStan provides an interface to Stan, a package for Bayesian inference using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo. Version 2.14.0.0 is installed on the CSF. Restrictions on use This software is open source so all CSF users may access it. Set up procedure To access the software you must first load the modulefile: module load apps\/gcc\/python-packages\/anaconda-2.5.0\/stan\/2.14.0.0 Note: this will automatically load anaconda python 2.5.0 for you (and the appropriate gcc compiler)&#8230; <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/pystan\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":16,"featured_media":0,"parent":31,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-3697","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3697","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/users\/16"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/comments?post=3697"}],"version-history":[{"count":3,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3697\/revisions"}],"predecessor-version":[{"id":3702,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3697\/revisions\/3702"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/31"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/media?parent=3697"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}