{"id":3624,"date":"2017-02-20T14:18:59","date_gmt":"2017-02-20T14:18:59","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/?page_id=3624"},"modified":"2017-02-20T14:29:11","modified_gmt":"2017-02-20T14:29:11","slug":"sunlighthnc","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/sunlighthnc\/","title":{"rendered":"SunlightHNC"},"content":{"rendered":"<h2>Overview<\/h2>\n<p><a href=\"https:\/\/github.com\/patrickbwarren\/SunlightHNC\">SunlightHNC<\/a> is a general purpose hypernetted chain (HNC) integral equation code.<\/p>\n<p>Version 1.9 beta is installed on the CSF.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>This is open source software, all users of the CSF may use it.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software you must first load the modulefile:<\/p>\n<pre>\r\nmodule load apps\/gcc\/sunlighthnc\/1.9beta\r\n<\/pre>\n<h2>Running the application<\/h2>\n<p>Please do not run sunlightHNC on the login node. Jobs should be submitted to the compute nodes via batch.<\/p>\n<h3>Serial batch job submission<\/h3>\n<p>Make sure you have the modulefile loaded then create a batch submission script. Please adapt the below skeleton script below appriopriately.<\/p>\n<pre>\r\n#!\/bin\/bash\r\n#$ -S \/bin\/bash\r\n#$ -cwd             # Job will run from the current directory\r\n#$ -V               # Job will inherit current environment settings\r\n\r\nAPP arg1 arg2 > out.log\r\n<\/pre>\n<p>Submit the jobscript using: <\/p>\n<pre>qsub <em>scriptname<\/em><\/pre>\n<p>where <em>scriptname<\/em> is the name of your jobscript.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"https:\/\/github.com\/patrickbwarren\/SunlightHNC\">SunlightHNC github site<\/a><\/li>\n<li><a href=\"https:\/\/github.com\/patrickbwarren\/SunlightHNC\/blob\/master\/oz_doc.pdf\">PDF Documentation<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview SunlightHNC is a general purpose hypernetted chain (HNC) integral equation code. Version 1.9 beta is installed on the CSF. Restrictions on use This is open source software, all users of the CSF may use it. Set up procedure To access the software you must first load the modulefile: module load apps\/gcc\/sunlighthnc\/1.9beta Running the application Please do not run sunlightHNC on the login node. Jobs should be submitted to the compute nodes via batch. Serial.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/sunlighthnc\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":16,"featured_media":0,"parent":31,"menu_order":0,"comment_status":"open","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-3624","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3624","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/users\/16"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/comments?post=3624"}],"version-history":[{"count":4,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3624\/revisions"}],"predecessor-version":[{"id":3629,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3624\/revisions\/3629"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/31"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/media?parent=3624"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}