{"id":3033,"date":"2016-05-27T12:17:01","date_gmt":"2016-05-27T12:17:01","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/?page_id=3033"},"modified":"2016-05-27T12:17:34","modified_gmt":"2016-05-27T12:17:34","slug":"mosaicfinder","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/mosaicfinder\/","title":{"rendered":"MosaicFinder"},"content":{"rendered":"<h2>Overview<\/h2>\n<p><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23365410\">MosaicFinder<\/a> is a program for the identification of fused gene families in sequence similarity networks.<\/p>\n<p>Version 2014-03-10 is installed on the CSF.<\/p>\n<h2>Restrictions on use<\/h2>\n<p>There are no access restrictions on using this software on the CSF.<\/p>\n<h2>Set up procedure<\/h2>\n<p>To access the software you must first load the modulefile:<\/p>\n<pre>\r\nmodule load apps\/gcc\/MosaicFinder\/2014-03-10\r\n<\/pre>\n<h2>Running the application<\/h2>\n<p>Please do not run MosaicFinder on the login node. Jobs should be submitted to the compute nodes via batch. You may run<\/p>\n<pre>\r\nsepmin -h\r\n<\/pre>\n<p>to see a list of flags the application accepts.<\/p>\n<h3>Serial batch job submission<\/h3>\n<p>Make sure you have the modulefile loaded then create a batch submission script, for example:<\/p>\n<pre>\r\n#!\/bin\/bash\r\n#$ -S \/bin\/bash\r\n#$ -cwd             # Job will run from the current directory\r\n#$ -V               # Job will inherit current environment settings\r\n\r\nsepmin -i inputfile -o outputfile -e evalue -p pident \r\n<\/pre>\n<p>Submit the jobscript using: <\/p>\n<pre>qsub <em>scriptname<\/em><\/pre>\n<p>where <em>scriptname<\/em> is the name of your jobscript.<\/p>\n<h2>Further info<\/h2>\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23365410\">MosaicFinder website<\/a><\/li>\n<\/ul>\n<h2>Updates<\/h2>\n<p>None.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Overview MosaicFinder is a program for the identification of fused gene families in sequence similarity networks. Version 2014-03-10 is installed on the CSF. Restrictions on use There are no access restrictions on using this software on the CSF. Set up procedure To access the software you must first load the modulefile: module load apps\/gcc\/MosaicFinder\/2014-03-10 Running the application Please do not run MosaicFinder on the login node. Jobs should be submitted to the compute nodes via.. <a href=\"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/applications\/mosaicfinder\/\">Read more &raquo;<\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":31,"menu_order":0,"comment_status":"open","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-3033","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3033","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/comments?post=3033"}],"version-history":[{"count":2,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3033\/revisions"}],"predecessor-version":[{"id":3035,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/3033\/revisions\/3035"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/31"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/media?parent=3033"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}