{"id":17,"date":"2013-04-15T14:30:27","date_gmt":"2013-04-15T14:30:27","guid":{"rendered":"http:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/?page_id=17"},"modified":"2017-09-15T13:08:09","modified_gmt":"2017-09-15T13:08:09","slug":"tools","status":"publish","type":"page","link":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/software\/tools\/","title":{"rendered":"Tools"},"content":{"rendered":"

List of tools for common tasks such as editing files, software development and configuration, simple post-processing. Please not that while these tools are often run on the login node, if you are processing large files or running jobs that take more than a few minutes to run, please run these tools via the batch queue. This can easily be done with a simple jobscript. Long running post-processing jobs may be killed if they are affecting the performance of the login node.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
PACKAGE<\/th>\nNOTES<\/th>\n<\/tr>\n
Anaconda Python<\/a><\/td>\nA scientific python distribution<\/td>\n<\/tr>\n
ARWpost<\/a><\/td>\nWRF data post processing<\/td>\n<\/tr>\n
autoconf<\/a><\/td>\nA tool for producing configure scripts <\/td>\n<\/tr>\n
automake<\/a><\/td>\nA tool for producing portable makefiles <\/td>\n<\/tr>\n
cmake<\/a><\/td>\n Cross-platform, open-source build system <\/td>\n<\/tr>\n
Editors<\/a><\/td>\n Text file editors – gedit, nano, vi, emacs and advice for windows users<\/td>\n<\/tr>\n
evince<\/a><\/td>\n A document viewer, particularly useful for accessing PDF documentation<\/td>\n<\/tr>\n
git<\/a><\/td>\nVersion Control <\/td>\n<\/tr>\n
gnuplot<\/a><\/td>\n Command line driven plotting tool <\/td>\n<\/tr>\n
grace\/xmgrace<\/a><\/td>\n 2D plotting tool <\/td>\n<\/tr>\n
java<\/a><\/td>\n Java application launcher<\/td>\n<\/tr>\n
Jupyter Notebook<\/a><\/td>\nJupyter Notebook interactive web-base python server<\/td>\n<\/tr>\n
LFTP<\/a><\/td>\nCommand-line File Transfer Program (FTP)<\/td>\n<\/tr>\n
ncl<\/a><\/td>\nNCAR Command Language for post-processing and visualization<\/td>\n<\/tr>\n
NEdit<\/a><\/td>\nText file editor with source code highlighting<\/td>\n<\/tr>\n
Perl<\/a><\/td>\n Perl and Bioperl <\/td>\n<\/tr>\n
Pigz<\/a><\/td>\nParallel gzip file compression\/decompression<\/td>\n<\/tr>\n
Python<\/a> <\/td>\n An interpreted, general-purpose high-level programming language<\/td>\n<\/tr>\n
Subversion\/svn<\/a><\/td>\n Version Control <\/td>\n<\/tr>\n
UKBioBank Env Vars<\/a><\/td>\nEnvironment variables to help access UK BioBank full-release datasets.<\/td>\n<\/tr>\n
unrar<\/a><\/td>\nRAR archive decompressor<\/td>\n<\/tr>\n
wget<\/a><\/td>\nDownloader tool<\/td>\n<\/tr>\n
Xmgr<\/a> <\/td>\n2D interactive plotting tool<\/td>\n<\/tr>\n
xmlstarlet<\/a> <\/td>\n Command line XML toolkit <\/td>\n<\/tr>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

List of tools for common tasks such as editing files, software development and configuration, simple post-processing. Please not that while these tools are often run on the login node, if you are processing large files or running jobs that take more than a few minutes to run, please run these tools via the batch queue. This can easily be done with a simple jobscript. Long running post-processing jobs may be killed if they are affecting.. Read more »<\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":8,"menu_order":0,"comment_status":"open","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-17","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/17","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/comments?post=17"}],"version-history":[{"count":20,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/17\/revisions"}],"predecessor-version":[{"id":4262,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/17\/revisions\/4262"}],"up":[{"embeddable":true,"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/pages\/8"}],"wp:attachment":[{"href":"https:\/\/ri.itservices.manchester.ac.uk\/csf-apps\/wp-json\/wp\/v2\/media?parent=17"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}